Multivariate Factor Analysis of milk fatty acids profile for GWAS analysis in Comisana sheep breed.
Abstract
Data di Pubblicazione:
2019
Abstract:
Sheep milk is important for the economy of Mediterranean countries. A large part of its production is reserved for traditional
cheese making, usually protected by the European Community
regulations. Milk fat content balance between MUFA and PUFA
is important for cheese flavour and, although it is well known
that fat is significantly influenced by both genetic and environmental factors, there is no relevant literature reporting genetic
or genomic parameters influencing it in sheep populations.
Nowadays, genome-wide association (GWA) studies represent
the gold standard method to investigate the genetic architecture
of complex traits, such as milk fat composition. However, because
of the nature of this multiple-trait, performing an effective association analysis is not an easy task. In fact, when correlated traits
are analysed, because of GWAS stringent cut-off, the outcomes
may lead to false negatives and broadly are difficult to interpret.
Methods that generate uncorrelated traits represent useful and
promising approaches to overcome this problem. In this study, a
multivariate factor analysis (MFA) was performed to extract latent
factors able to explain metabolic information of the original
variables and usable in a GWA analysis. To achieve this, we first
characterised milk samples from 200 Comisana ewes, reared
in genetic Centre of Asciano for their fat profile by gas-chromatography. Subjects were genotyped with SNP array and a single-marker regression model for GWAS was performed. The
extracted factors were representative of the following groups: de
novo fatty acids, biohydrogenation, branched fatty acids and
desaturation. Moreover, GWA analysis showed a general increase
of significances compared with the analysis using the original
variables. Nevertheless, this was not sufficient to reach the
Bonferroni statistical threshold, except for a single SNP on Chr
6 in association with desaturation factor group. To the best of our
knowledge, this was the first study performing a MFA on milk FA
in Comisana. The preliminary results were interesting and in
line with previously published studies on bovine
Tipologia CRIS:
04E-Meeting abstract in rivista
Elenco autori:
Valentino Palombo, Giustino Gaspa, Giuseppe Conte, Nicola Macciotta, Marcello
Mele, Fabio Pilla, Silverio Grande, Mariasilvia D’Andrea.
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